Results for "df"
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CovCal: Coverage / Read Count Calculator
...ct what you want to calculate. Written by Stephen Turner, based on the Lander-Waterman formula, inspired by a similar calculator written by James Hadfield. Coverage is calculated a...2187 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM form...
2874 days ago
- ...biguous contigs, or when they run out, single copy contigs, and ii) the small_contig_inserter, which inserts the small contigs within scaffolds buildfasta converts the scaffold(s)...
2874 days ago
- ...A sequence data. To install DECIPHER, see the Downloads page. To begin using DECIPHER read the "Getting Started DECIPHERing" tutorial. Refer to the PDF documents below for instructi...
2795 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of conti...
2726 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdflatex (usually part of TeTeX) ggplot2 (from R prompt type install.packages("ggplot2","proto","...2725 days ago
Understanding Greedy Algorithms
...w.cs.rpi.edu/~magdon/ps/conference/super_biokdd.pdf https://ocw.mit.edu/courses/...spring-2014/lecture-slides/MIT7_91JS14_Lecture6.pdf http://schatzlab.cshl.edu/te...cs.berkeley.edu/Pubs/TechRpts/2016/EECS-2016-43.pdf2722 days ago
- ...The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes. Genome Biology, 15 (11), 1-15 [PDF]...
2672 days ago
- ...pt Ideoplot.R --heatmap hm.bed --annotate annotations.bed --out ideogram.pdf -or- Rscript Ideoplot.R --ann...ow) --annotate, -a Add character annotations. --out, -o PDF output name. --stripes, -s...
2659 days ago
- JSON (JavaScript Object Notation) is a lightweight data-interchange format. It is easy for humans to read and write. It is easy for machines to parse and generat...
2609 days ago
