2053 days ago
RopeBWT2: Incremental construction of FM-index for DNA sequences
RopeBWT2 is an tool for constructing the FM-index for a collection of DNA sequences. It works by incrementally inserting one or multiple sequences into an existing ps...2033 days ago
VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity
VGSC, the Vector Graph toolkit of genome Synteny and Collinearity, and its online service, to visualize the synteny and collinearity in the common graphical format, including both raster (JPEG, Bitmap, and PNG) and vector graphic (SVG, EPS, and PDF).2027 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
...R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of these programs are i...2027 days ago
Pacasus: Correction of palindromes in long reads from PacBio and Nanopore
...volutionizing Next-Generation Sequencing (2nd edition) conference in the source folder: https://github.com/swarris/Pacasus/blob/master/vib2017.pdf. The prepint version is foun...2015 days ago
lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
lordFAST is a sensitive tool for mapping long reads with high error rates. lordFAST is specially designed for...ding on the reads and application. lordFAST, a novel long-read mapper...er SMS technologies to a reference. lordFAST not only has higher sensit...2000 days ago
HumCFS: a database of fragile sites in human chromosomes
...this platform HumCFS, which provides comprehensive information about experimentally identified CFS at a single source. https://link.springer.com/epdf/10.1186/s12864-018-5330-5?aut...1854 days ago
BLAST options, setting and defaults
BLAST stands for Basic Local Alignment Search Tool and was developed by Altschul et al. (1990) and significantly improved by Altschul et al. (1997). It is a...1987 days ago
1985 days ago
EyeChrom: Visualizing Chromosome Count Data From Plants
...note: Report an issue via Gihub: github.com/roszenil/CCDBcurator and github.com/RodrigoRivero/EyeChrom https://bsapubs.onlinelibrary.wiley.com/doi/pdf/10.1002/aps3.12071957 days ago