Results for "differential expression"
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HOMER: Software for motif discovery and next-gen sequencing analysis
...les Visualizing data in a genome browser RNA-Seq De novo transcript discovery and differential analysis with Cufflinks Differential expression analysis with R/Bioconductor Clustering of large expression datasets (microarray or RNA-S...2928 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoter...locations can interact with each other via chromatin folding and affect gene expression levels. Genomic technologies...
2866 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data a...analytical tasks like performing upper-quantile normalization on expression data or convert genome wide gene expression to z-scores when comparing ex...
2864 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local t...vailability of a reference genome/transcriptome and on the need to perform a differenti...
2816 days ago
- ...ul tool for the analysis of miRNA (or more generall short RNA) expression using short-read deep sequencin...reference genomes using one of four different mappers, create differential gene (miRNA) expression profiles and cluster reads us...
2767 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal w...2752 days ago
- Visualization has played an extremely important role in the current genomic revolution to inspect and understand variants, expression patterns, evolutionary change...
2750 days ago
- This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained by differenti...
2617 days ago
GroopM: Metagenomic binning toolset
GroopM is a metagenomic binning toolset. It leverages spatio-temoraldynamics (differential coverage) to accurately (and almost automatically)extract population genomes from multi-sample metageno...2613 days ago
- This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained by differenti...
2606 days ago
