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...nd the methods paper here: https://peerj.com/articles/1319/ Anvi’o would not have been possible without the help of many people who directly or indirectly contributed to its developmen...2894 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is directly assigned to a taxon within the NCBI taxonomy by comparing it...
2884 days ago
- ...to accept contig linking data other than specified by mate-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the output of MUMmer), ph...
2834 days ago
- We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the project name is "DmelChr4".
2832 days ago
- ...de a new approach that allows researchers to reconstruct genomes very closely related to the reference genome (e.g., mutants of the same species) directly from the reads used in the ex...
2733 days ago
Many-Core Engine (MCE) for Perl example
...e distribution. MCE::Examples Describes various demonstrations for MCE including a Monte Carlo simulation. MCE::Subs Exports functions mapped directly to MCE methods; e.g. mce_wid....2666 days ago
ChromHMM: Chromatin state discovery and characterization
...ates the biological characterization of each state. ChromHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visualized in a genome browse...2588 days ago
iTOL: Interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display, annotation and management of phylogenetic trees. Explore your trees directly in the browser, and annotate them with va...2498 days ago
- ...ead to the loss information. Unlike the current methods which make use the reference genome, we developed a method to detect the breakpoint reads directly from observing the difference...
2373 days ago
BEAP: Blast Extension and Assembly Program
...a EST or partial gene segment, as "primer", to recursively blast nucleotide databases in an attempt to obtain all sequences that overlaps, directly or indirectly, with the "primer" therefore...2170 days ago
