Results for "discordant read pairs"
Blogs
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to anal...teresting; and the great biological programmer also read about the BioPerl packages, g...ng with scientific words. Thanks to all of you for readi...3952 days ago
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge am...they’re free to download the source code and read exactly what the program does...e functionality that you need in your analysis is already...3709 days ago
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Bookmarks
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3912 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop tut...bioinformatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP cal...p://www.biomedcentral.com/1471-2105/14/S7/S11 DDBJ read...3489 days ago
- +218 more Bookmarks
Files
- Hmm .. Don't worry you read it right .. this is not pi but bi ... "life of Bioinformatician(BI)". Disclaimer: This cartoon is solely designed to create humour and fun, not to offend any PI, supervisor or student.
3907 days ago
- DOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1.3.1/blasr...ng "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have the following e...Finding the SA coordinates of the reads using BWA aln...[Thu Jun 14...FALCON-Unzip-Scaff.bamMapping long-reads...
2153 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows...ime has been change, the biological programmers are ready to use the C++ libraries of...switch between upper/lower case, etc.Applications: read...3949 days ago
- I found several useful bioinformatics articles which exaplain, define and elaborate&nb...this time aimed at highschool students, but fun to read for everyone. Includes...sby, Science , 289: 2309 (2000). Are you ready...
3923 days ago
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Top-level pages
- An algorithm is a computable set of steps to achieve a desired result. W...ch manner that from the outcome we can read a definite answer, "yes" or "...oids recomputing solutions that have already been computed. - The ma.../~jason/hmmlinks.html•http://www.breadf...
3948 days ago
Best book Titles for Learning Bionformatics
Nothing can add to our intellect more than reading a book. In books, we can ex...ives and other people’s lives. Reading can make us more intelligent, updated, imaginative. Without reading we wouldn’t know any...Human Molecular Genetics, Andrew P. Read,...3919 days ago
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Wire posts
News
High Density Sheep SNP Genotyping Chip released!!!
If you are working on Sheep genomics then there is a good news for you. FarmIQ in conjunction with Illumina and th...s from 23 breeds. The remaining SNPs were derived from the draft ovine genome. Read...3898 days ago
DNA Bending Propensity in the Presence of Base Mismatches: Implications for DNA Repair
Understanding how the human body recognizes damaged DNA and initiates repair fascina...:T, G:A, G:G, T:T, A:A, A+:C) vs. non-defective DNA (containing A:T or G:C base pairs). DNA repair mechanisms likel...3913 days ago
- +26 more News
Opportunity posts
Project Assistant Position at JMI
Project Assistant Position (@ Rs.10,000/pm Fixed) is available for one year ina research project funded by the Dep...be paid. For any further information you may e-mail to: mihassan@jmLac.in Read...3525 days ago
Bioinformatician for a lab at the Weizmann Institute of Science, Israel
We are looking for enthusiastic, motivated and talented people, at all career stages (MSc, PhD, postdoctoral fello...biology and bioinformatics to study the biology of PTMs in health and disease. Read...3494 days ago
- +6 more Opportunity posts
ResearchLabs posts
- In a lot of my work in bioinformatics, I have been using hidden Markov models (HMMs). As a postdoc with David Haus...here the group is working on methods for structure prediction from sequence. To read...
3871 days ago
- The bakers yeast, Saccharomyces cerevisiae is an ideal model organism to understand...le of these complexes in crossover formation and distribution among all homolog pairs. Errors in this process are l...
2983 days ago
- +3 more ResearchLabs posts
Fun
Perl Poem: Parse it in both Perl and English!
Larry's, er, corpus has fortunately been overshadowed by that of the reigning Perl Poet, Sharon Hopkins. She has w...,together), tell me. do something if distressed; @dawn, dance;@evening, sing;read...3920 days ago
You can't install David Brownlee ;-)
By mistake I ask cpan to install abs, and it return this message. jitendra@jitendra-Aspire-S3-391[parallelLastz] sudo cpan install abs [ 4:43AM]Going to read...1832 days ago
Video
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode all human DNA sequences, has highlighted a re...genome. But the amount of information involved is huge, so recently, it's been read...3918 days ago
The Story of You: ENCODE and the human genome
Ever since a monk called Mendel started breeding pea plants we've been learning about our genomes. In 1953, Watson...e ENCODE project, as it's called, is the latest chapter in the story of you. To read...3908 days ago
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Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has m...dna = Entrez.efetch(db='nucleotide',id=nm, rettype = 'fasta', retmode= 'text').read(...1138 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPl...gs(TRUE)[2] fastANI_visual_file=commandArgs(TRUE)[3] library(genoPlotR) #Read...1103 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineerin...PMID IDs; PMID: 27378293 and PMID: 26384938 can be read. What's your all-time fa...increasing amount of data in databases, there is already...2364 days ago
Tags
Illuminating next generation sequencing data with Go
Another good lecture for Illumina sequencing data analysis from Dan Kortschak, Bioinformatics Group, School of Molecular and Biomedical Science ,The University of AdelaideTags: Illumina, sequencing, discordant read pairs, structural variation
3910 days ago
