Results for "discordant read pairs"
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Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is directly assigned to a tax...robial eukaryotes. Kaiju translates reads into amino acid sequences, w...search can process up to millions of reads...2883 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read...
2867 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovering and genotypin...heterogeneous data sets, including variations in sequencing depth, read lengths and mixtures of paired and single-end reads...
2812 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open sourc...ular, Bambus is able to accept contig linking data other than specified by mate-pairs. Such sources of information...
2833 days ago
- ACT is a Java application for displaying pairwise comparisons between two or more DNA sequences. It can be used to...nteny, in the context of the entire sequences and their annotation. It can read...
2811 days ago
- Redundans pipeline assists an assembly of...contigs, paired-end and/or mate pairs sequencing libraries an...agments using paired-end and/or mate-pairs reads gap closing Redundans is:...and library types (paired-end, mate pairs, fosmids) modular: every ste...
2817 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program...rmation from paired-end/mate-pair/long reads to order and orient the inte...vided by the paired-end/mate-pair/long reads (for further details see Gao...contains the wrapper script OPERA-long-read...2809 days ago
- VALET is a pipeline for performing de novo validation of metagenomic a...a number of properties that should hold true for a correct assembly (e.g., mate-pairs are aligned at the correct di...
2796 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular...omatically via a simple GUI. Contig boundaries and read coverage can be displayed for...led sequence data. BRIG also accepts SAM-formatted read-...2788 days ago
- DECIPHER is a software toolset that can be used to maintain, analyze, and decipher large amounts of DNA sequence data. To install DECIPHER, see the Downloads page. To begin using DECIPHER read...
2788 days ago
