Results for "discordant read pairs"
Bio-Scripts
jitendra@jitendra-UNLOCK-INSTALL[SNP] wg...termines the barcode for each read in an Illumina lane. I...Calculate the fraction of reads coming from cross-sample con...ity from the sequence of read pairs FilterLongReadAlignment...etting MAPQ to 0 for unmapped reads ClipReads...2089 days ago
- library(vcfR) # Input the files. vcf
2074 days ago
- #http://www.nupack.org/downloads/source...nsStar.c: In function ‘nsStarPairsOrParensFull’: nsStar.c:30:1.../src/shared/constants -c -o pairsPr.o pairsPr.c pairsPr.c: In..../src/shared concentrations.o ReadCommandLine.o InputFileReader.o...red -I../../../src/shared/rng pairs.o -o ../../../bin/pairs -L../...
2040 days ago
- #!/bin/bash Plot the coverage script chr=$1 start=$2 end=$3 samtools depth deduped_MA605.bam > deduped_MA605.coverage awk '$1 == $chr {print $0}' deduped_M...
2018 days ago
- $ sudo apt install npm Reading package lists... Done Building dependency tree Reading state information... Done...e node-pseudomap node-qs node-read node-read-package-json node-r...tu bionic/universe amd64 node-read all 1.0.7-1 [4,572 B]...ously unselected package node-read....
1567 days ago
Bash script to alignment of short reads against reference genome !
bwa mem -t 40 -R '@RG\tID:K12\tSM:K12' \ E.coli_K12_MG1655....nment with bwa: bwa mem -t $threads -R '@RG\tID:K12\tSM:K12' ---...s says "align using so many threads" and also "give the reads th...: samtools view -b - --- this reads SAM from stdin (the - specif...l it we're working with short read...1573 days ago
Installing ggplot2 and its dependencies on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter/minidot/bin$ sudo R [sudo] password for jit: R version 3.4.4...rong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read.c -o read....1564 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencin...d -$N > selected.txt # Store the data in the reads folder. mkdir -p reads # Download the SRR data f...merge -f all.bam bam/*.bam # Investigate the readg...1556 days ago
- library(vcfR) vcf_file
1539 days ago
- jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ sudo docker system df TYPE TOTAL ACT...nm install lib::abs && cpanm install File::Remove && cpanm install Spreadsheet::Read...
1523 days ago
