Results for "discordant reads"
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Scaffolding of a bacterial genome using MinION nanopore sequencing
Second generation sequencing has revolutionized genomic studies. However, most genomes c...easily resolved. A new generation of sequencers offering substantially longer reads is emerging, notably the Paci...3222 days ago
Simons Genome Diversity Project
Complete genome sequences from more than one hundred diverse human populations All geno...sequenced to at least 30x coverage using Illumina technology. The sequencing reads were mapped and genotyped usi...1090 days ago
- Pilon is a software tool which can be used to: Automatical...of the genome along with one or more BAM files of reads aligned to the input FASTA fi...s between the input genome and the evidence in the reads. It then attempts to make imp...
3006 days ago
- HiCdat: a fast and easy-to-use Hi-C data analysis tool HiCdat is easy-to-use and provides solutions starting from aligned reads up to in-depth analyses. Impo...
3003 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the...
2976 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and th...y to process large volumes of RNA-seq reads. Trinity partitions the seque...s in parallel, tracing the paths that reads and pairs of reads take withi...ike so: Trinity --seqType fq --left reads_1.fq --right reads_2.fq --CPU...2963 days ago
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2949 days ago
- MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/maps reads gained by electrophore...
2949 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orien...ger chromosomal fragments using comparative genome information and paired-end reads. http://www.ncbi.nlm.nih.gov...2949 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It...r with a highly optimized implementation, it can merge millions of paired end reads within a couple of minutes on...2949 days ago
