Results for "discordant reads"
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MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads generated by all the major se...2904 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's re...esequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that contain seque...
2904 days ago
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines....ivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn graphs. Accep...
2164 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequenci...mes Hadfield. Coverage is calculated as C=LN/G and reads as N=CG/L where C = Coverage...), G = Haploid genome size (bp), and N = Number of reads. Source code on GitHub.2164 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes...SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with uniform substitution seq...
2871 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illum...ain characteristics. A5-miseq will likely not work well with Illumina reads shorter than around 80nt, or reads where the base qualities are...
2815 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labe...BLAST program. In its fastest mode, Kraken classifies 100 base pair reads at a rate of over 4.1 million reads per minute, 909 times faster...2867 days ago
- Kaiju is a program for the taxonomic classificat...etagenomic high-throughput sequencing reads. Each read is directly assign...crobial eukaryotes. Kaiju translates reads into amino acid sequences, wh...search can process up to millions of reads per minute using, for example...
2867 days ago
- Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox for in...k with hundreds of samples containing hundreds of millions of sequencing reads. Blast-like analysis can be p...
2839 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovering...tions in sequencing depth, read lengths and mixtures of paired and single-end reads. A minimum of 20 to 30 genome...
2796 days ago
