Results for "discordant reads"
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KisSplice is a software that enables to analyse RNA-seq data with or withou...h condition. It has been tested on Illumina datasets of up to 1G reads. Its memory consumption is around 5Gb for 100M reads. KisSplice is not a full-len...2817 days ago
- Gene finding in eukaryotic genomes is notoriously difficult to automate. The task is to...r that usually requires supervised training and uses information from RNA-Seq reads in the prediction step. Compl...
1949 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Program takes as inp...scaffolding: joining of genome fragments using paired-end and/or mate-pairs reads gap closing Redundans is:...
2801 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a s...mation from paired-end/mate-pair/long reads to order and orient the inter...ided by the paired-end/mate-pair/long reads (for further details see Gao...ad that enables scaffolding with long-reads from third-generation sequenc...2793 days ago
- Fermi is a de novo assembler with a particular f...sembling Illumina short sequence reads from a mammal-sized genome. I...represent all the information in raw reads.Fermi follows the overlap-lay...fix misassemblies by using paired-end reads to achieve an accuracy c...
2793 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerfu...ion MIRO is especially adapted for the analysis of reads generated with the Illumina s...ing platform. MIRO allows to preprocess the Solexa-reads, map them flexibly to several...
2768 days ago
- BBMAP • a solution for everything That content has been reformatted a...ormat is automatically chosen/set. Using BBMap Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be brok...
2762 days ago
- Metagenomics sequencing projects collect samples of DNA from...ome is phylogenetic classification of raw sequence reads into groups representing the...ly classify DNA sequences, can accurately classify reads as short as 100 bp. Its accur...
2762 days ago
- Visualization has played an extremely important...tructural variations captured by long reads or assembled contigs often ne...shows patterns in alignments of many reads across multiple chromosomes,...files with long, short, or paired-end reads, Ribbon can also load coordin...
2751 days ago
- Summary: GenomeScope is an open-source web tool to rapidly estimate the over...g genome size, heterozygosity rate, and repeat content from unprocessed short reads. These features are essential...
2344 days ago
