orthodotter: Synteny plots (oxford grid)
...To launch the clustering of dots, use extra-option 1=dist,min_nb_genes where dist is the minimal distance (euclidian) between two point...2462 days ago
2336 days ago
Mash: fast genome and metagenome distance estimation using MinHash
Mash is normally distributed as a dependency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for oth...2336 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
...nd B is considered correct if: Their relative orientation is correct Their relative order is correct The gap estimate is similar to the true distance on the reference The probl...2237 days ago
2153 days ago
STELLAR: fast and exact local alignments
STELLAR is very practical and fast on very long sequences which makes it a suitable new tool for finding local alignments between genomic sequences under the edit distance model. Binaries are freely available for Linux, Windows, and Mac OS X at http://www.seqan.de/projects/stellar.2077 days ago
LoRMA: A tool for correcting sequencing errors in long reads
...orrection method based on de Bruijn graphs with increasing length of k-mers, and second, the corrected reads are further polished using long-distance dependencies that are found u...2069 days ago
2055 days ago
Heatmapper: web-enabled heat mapping for all
...te, cluster and visualize: 1) expression-based heat maps from transcriptomic, proteomic and metabolomic experiments; 2) pairwise distance maps; 3) correlation m...2044 days ago
FRODOCK 2.0: fast protein–protein docking server
...eb interface provides a very effective tool to explore and select protein–protein models and interactively screen them against experimental distance constraints. The competitive...2028 days ago