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Results for "dna-seq"

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• • Aaryan Lokwani@aaryan

  

  Sed illegal charters from fasta. $ sed '/^[^>]/ s/[^AGTC]/N/gi' < seq.fa #fasta #otherthanATGC #replace #sed #Linux #illegal

  2153 days ago

• • Jit@jit.aber

  

  perl -e '$/="\n>"; while (<>) { s/>//g; my ($id, $seq) = split /\n/; print ">$_" if length $seq; }' < all_p_ctg.fasta > all_p_ctg_corrected.fasta #Convert #Fasta #Zero

  2148 days ago

• • Rahul Nayak@rahul

  

  Transcriptome assembly https://www.rna-seqblog.com/tag/transcriptome-assembly/ #RNA-seq #Transcriptome #Assembly

  2142 days ago

• • Jit@jit.aber

  

  Genome Assembly Cookbook http://aidenlab.org/assembly/manual_180322.pdf #HiC #3D-DNA #Juicer

  2069 days ago

• • Neelam Jha@neelam

  

  Reverse complement of fasta sequence $ tr -d "\n " < chrII.fa | tr "[ATGCatgcNn]" "[TACGtacgNn]" | rev > chrII_reverseHai.fa #Reverse #Complement #DNA

  2052 days ago

• • Neelam Jha@neelam

  

  Consensus of nucleotide sequences https://www.perlmonks.org/bare/?node_id=500962 #Consensus #Nucleotide #DNA

  2041 days ago

• • Jit@jit.aber

  

  AB1 chromatograms used to validate the #ConTAMPR method for detecting DNA contamination https://data.mendeley.com/datasets/fsjpwrnv4t/1

  1954 days ago

• • Rahul Nayak@rahul

  

  ATM, ATR, and DNA-PK: The Trinity at the Heart of the #DNA #Damage Response https://www.sciencedirect.com/science/article/pii/S1097276517303544

  1945 days ago

• • Abhimanyu Singh@abhimanyu

  

  Informatics for #RNA-seq: A web resource for analysis on the cloud https://github.com/griffithlab/rnaseq_tutorial/wiki #Scripts #Assembly

  1804 days ago

• • Jit@jit.aber

  

  Transcript assembly and quantification for RNA-Seq https://github.com/mpertea/stringtie2 #Transcript #assembly

  1771 days ago

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