Results for "dotplots"
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Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
...the haplotig 'pool'. The pipeline uses mapped read coverage and Minimap2 alignments to determine which contigs to keep for the haploid assembly. Dotplots are optionally produced for a...1963 days ago
- ...Backronym for "GEnome PAir - Rapid Dotter") allows the calculation of dotplots even for large sequences like...J, Arnold R, Rattei T. Gepard: A rapid and sensitive tool for creating dotplots on genome scale. Bioinformati...
1711 days ago
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- Gepard (German: "cheetah", Backronym for "GEnome PAir - Rapid Dotter") allows the calculation of dotplots even for large sequences like chromosomes or bacterial genomes. Reference: Krumsiek J, Arnold R, Rattei T. Gepard: A rapid and sensitive tool for creating dotplots on genome scale. Bioinforma...
Tags: Gepard, calculation, dotplots, sequences, chromosomes, bacterial, genomes
1711 days ago
flexidot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses
FlexiDot is a cross-platform dotplot suite generating high quality self, pairwise and all-against-all visualizations. To improve dotplot suitability for comparison of consensus and error-prone sequences, FlexiDot harbors routines for strict and relaxed handling of mismatches and ambiguous residue...Tags: Highly, customizable, ambiguity, aware, dotplots, visual, sequence, analyses, synteny
1469 days ago
