Results for "duplicates"
Blogs
BBTools for bioinformatician !
...in=assembly1.fa,assembly2.fa out=merged.fa That will absorb exact duplicates and containments. You can use...a read came from; in other words, it can't remove only reads that are duplicates across multiple files but lea...2283 days ago
Bookmarks
- ...ed. Then select one or more output types and add your identifiers in the ID list box. Set the remove duplicate values to 'No' if you do not want duplicates to be removed. Clicking on su...
2906 days ago
jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
...a reads, as well as reads from Pacific Biosciences These simulations include sequencing errors, mapping qualities, multiplexing, and optical/PCR duplicates. All outputs can be written t...1758 days ago
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News
Genome of Rainbow Trout Sequenced
...here are fewer duplicated genes still present. Most of the duplicated genes get lost or modified so much that they are no longer recognizable as duplicates over time. In the trout and s...3675 days ago
Bio-Scripts
Samtools commands for bioinformatician !
...total+=1}END{print (total/c)*100}' ### flagstat # output file has two columns: QC-passed reads and QC-failed reads # and rows: total reads, duplicates, mapped. samtools flagstat s...1615 days ago
Bash script to alignment of short reads against reference genome !
...w.bam --- sort the BAM file, writing it to .sorted.bam. #marking PCR duplicates: sambamba markdup SRR1770413....SRR1770413.bam --- this marks reads which appear to be redundant PCR duplicates based on their read mapping p...1572 days ago
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Comment on "R and Bioconductor Tutorial"
NGS with R ShortRead – Quality assesment of the reads, finding duplicates, trimming, string pattern searches [1] Biostrings – Reading sequences in R [2] BSGenomes &ndas...3683 days ago
