Results for "duplication"
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Chromosome number is a remarkably dynamic feature of eukaryotic evolution. Chromosome numbers can change by a duplication of the whole genome (a process termed polyploidy), or by single...3397 days ago
- Understanding Following table and graphs Duplication level kmer profile per base GC content per base N content per base quality per base sequence content per sequence GC conten...
2951 days ago
- ...lset for generating the synteny correspondences in Plant Genome Duplication Database. It is intended as a...across different genomes. More at http://chibba.agtec.uga.edu/duplication/mcscan/...
2700 days ago
DeCoSTAR - Detection of Co-evolution
...n pairs of ancestral genes or gene domains.Ancestral genes or domains are deduced from reconciled gene trees in a context of birth, speciation, duplication, loss, transfer, which are ei...2587 days ago
- ...protein) to another. Hence, detecting orthology relations has become an important task in the post-genomic era. Various genomic events, such as duplication and horizontal gene transfer,...
2373 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...ovides elements for commonly used features, such as taxonomic information, gene names and identifiers, branch lengths, support values, and gene duplication and speciation events. Using...2358 days ago
- The dupRadar package gives an insight into the duplication problem by graphically relating the gene expression level and the duplication rate present on it. Thus, failed experiments can be easily identified at a glance
2291 days ago
SDA: Long-read sequence and assembly of segmental duplications
Segmental Duplication Assembler (SDA; https://github.com/mvollger/SDA) constructs graphs in which paralogous sequence variants define the nodes and long-read sequences provide...1897 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...ovides elements for commonly used features, such as taxonomic information, gene names and identifiers, branch lengths, support values, and gene duplication and speciation events. Using...1619 days ago
- WGDdetector pipeline that integrates all analyses including gene family constructing, dS estimating and phasing, and outputting the dS values of each paralogs pairs proce...
1391 days ago
