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WGDdetector: a pipeline for detecting whole genome duplication events using the genome or transcriptome annotations
By LEGE 1582 days ago
https://github.com/yongzhiyang2012/wgddetector
WGDdetector pipeline that integrates all analyses including gene family constructing, dS estimating and phasing, and outputting the dS values of each paralogs pairs processed with only one command. We further chose four species (Arabidopsis thaliana, Juglans regia, Populus trichocarpa and Xenopus laevis) representing herb, wood and animal, to test its practicability. Our final results showed a high degree of accuracy with the previous studies using both genome and transcriptome data.
More at https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2670-3
