Results for "errors"
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REAPR: a universal tool for genome assembly evaluation
...f a reference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorrect scaffolds and flag other errors in an assembly for manual ins...2954 days ago
- ...t and k-mer frequency. ALE pinpoints synthetic errors in both single and metagenomic assemblies, including single-base errors, insertions/deletions, genome...iences data, ALE identifies 12 of 12 synthetic errors in a Lambda Phage genome, sur...
2935 days ago
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences se...almela, R. Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn...
2170 days ago
- ...oid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with uniform substitution sequencing errors. It does not generate INDEL sequencing errors, but this can be partly compe...
2877 days ago
OPERA : Optimal Paired-End Read Assembler
...onwards) including refinements to its basic algorithm (to reduce local errors, improve efficiency etc.) and...nificantly improved corrected N50 and reduced the number of scaffolding errors. Furthermore, our latest rele...2799 days ago
- ...x hal2maf) in the submodules/ directory structure, first source progressiveCactus/environment to load the installed environment. If any errors occur during the build proces...
2669 days ago
- PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format with quality information. I...
2663 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
...stic method that estimates the ploidy of any given contig/scaffold based on its allele proportions. In the process, they report findings regarding errors in sequencing. The method can...2631 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation...erence set contains Illumina reads. Usually, errors in PacBio reads include many...atively less substitutions. LoRDEC can correct errors of all these types. After cor...2586 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...lose gaps left open by the assembler in a draft genome, even when using the same data sets as used by the original assembler. iCORN, that enables errors in the consensus sequence to...2554 days ago
