Pollux: platform independent error correction of single and mixed genomes
...General-purpose error corrector that corrects errors introduced by Illumina, Ion T...e data. In addition to correcting substitution errors, we locate and correct insertion, deletion, and homopolymer errors while remaining sensitive to...2558 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...HTS scaffolders using Illumina paired reads of three bacterial genomes. Our algorithm constructs a comparable number of scaffolds, but makes fewer errors. This result is further impro...2554 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...umina. These simulated datasets can be used to test the accuracy of bioinformatic tools under specific hypothesis, e.g. with or without sequencing errors, or with low or high communit...2553 days ago
eQuant : energy-based quality assessment of protein
Protein structures are of varying quality. Especially, in-silico modeled structures are prone to contain serious errors, which limit the usefulness and reliability of these...2521 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...Illumina reads derived from the 15.4 megabase genome of the haploid yeast Pichia stipitis. More than 95% of the genome is recovered, with no errors; half the assembled sequence...2386 days ago
QuorUM: An Error Corrector for Illumina Reads
...on average has an error in some read at every base in the genome. These errors make handling the data more c...re is enough information in the reads to correct most of the sequencing errors, thus making subsequent use o...2384 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...s, they do not have a correction or consensus step, and therefore the resulting assemblies are contiguous (i.e. long) but very noisy (i.e. full of errors) We start with an all agains...2366 days ago
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
...gher than the recently published tool FLASH. When COPE is applied to real reads for genome assembly, the resulting contigs are found to have fewer errors and give a 14-fold improvemen...2357 days ago
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