MCMCTREE: a phylogenetic program for Bayesian estimation of species divergence times
MCMCTREE is a phylogenetic program for Bayesian estimation of species divergence times using soft fossil...set of Inoue et al. (2010). Here we conduct a commonly used time estimation method, "Approximate Likeliho...2185 days ago
nQuire: a statistical framework for ploidy estimation using next generation sequencing
nQuire provides a statistical framework to study organisms with intraspecific variation in ploidy. nQuire is likely to be useful in epidemiological studies of pathogens,...2061 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is obs...1942 days ago
MGSE: Mapping-based Genome Size Estimation
...number of mapped bases. Both values are subjected to the genome size estimation. Providing accurate reference regions is crucial for this genome size estimation....1591 days ago
proActiv: Estimation of Promoter Activity from RNA-Seq data
proActiv is an R package that estimates promoter activity from RNA-Seq data. proActiv uses aligned reads and genome annotations as input, and provides absolute and relati...1381 days ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
...vidual genomes via binning procedures. Thus, SqueezeMeta features several unique characteristics: Co-assembly procedure with read mapping for estimation of the abundances of genes in...1378 days ago