GenomeRing: alignment visualization based on SuperGenome coordinates
...h analyses are often based on whole-genome alignments to elucidate structural differences arising from insertions, deletions or from rearrangement events. Computational tools that can...2659 days ago
DeCoSTAR - Detection of Co-evolution
...y to handle badly assembled genomes. DeCoSTAR is able to reconstruct the histories of domains inside genes, including gene fusion and fission events, as well as ancestral genome...2573 days ago
2359 days ago
2353 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...only used features, such as taxonomic information, gene names and identifiers, branch lengths, support values, and gene duplication and speciation events. Using these standardized ele...2344 days ago
Biological file format tutorial
This section explains some of the commonly used file formats in bioinformatics. The information provided here is basic and designed to help users to distinguish the dif...2326 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM app...2305 days ago
HTTDB - Horizontally transferred transposable elements database
...rns, we developed the HTT database to keep an updated repository of HTT events in all eukaryotes, allowing not only TE specialists to add new events and search the database, but...2289 days ago
REGEN: Ancestral Genome Reconstruction for Bacteria
REGEN infers evolutionary events, including gene creation and deletion and replicon fission and fusion. The reconstruction can be performed by either a maximum parsimony or a maximu...2247 days ago
2177 days ago