Synteny Portal: a web-based application portal for synteny block analysis
...al will serve as a highly valuable tool that will enable biologists to easily perform comparative genomics studies by compensating limitations of existing tools. Synteny Portal is free...2553 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...represents the first step towards discovering novel CAZyme catalysts in metagenomes; dbCAN provides a subfamily classification of the existing CAZyme families based on sequ...2548 days ago
Omega2: metagenome assembly pipeline
...aset. In comparison with Celera on the MiSeq dataset, Omega provided more continuous assemblies overall using a fraction of the computing time of existing overlap-layout-consensus asse...2506 days ago
GeneProf: analysis of high-throughput sequencing experiment
...amining Public Next-Gen Data..'). Extensibility:Algorithm developers and computer programmers can develop their own modules and extend GeneProf. Existing software can be easily wrappe...2510 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...ve visualization of the results. We tested the software on both simulated and biological realistic data and compared its performance with similar existing software and data source....2374 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...novel open-source hybrid error correction algorithm Nanocorr (https://github.com/jgurtowski/nanocorr) specifically for Oxford Nanopore reads, as existing packages were incapable of as...2364 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
...lows to simultaneously work with scaffold assemblies obtained from any in silico and in vitro techniques, supporting multiple existing formats via built-in converte...2335 days ago
Seal: SEquence ALignment evaluation suite
...te. This software (implemented in Java) provides several utilities that can be used to evaluate alignment algorithms, including: Reading a pre-existing reference genome from one or...2329 days ago
GIGGLE: a search engine for large-scale integrated genome analysis
...me interval files. GIGGLE (https://github.com/ryanlayer/giggle) scales to billions of intervals and is over three orders of magnitude faster than existing methods. Its speed extends th...2322 days ago
2223 days ago