Results for "exon"
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...protein sequence. HybPiper also includes post-processing scripts, run after the main pipeline, to also extract the intronic regions flanking each exon, investigate putative paralog...2744 days ago
- ...n building homology maps is to use exons that are orthologous in mult...For each genome, obtain a set of exon annotations. These annotations can be a combination of both exon predictions (e.g. Genscan) an...her gene annotations. Compare all exons against all exons in other g...
2650 days ago
Genome Annotation Transfer Utility (GATU)
...Fs can be further analyzed using BLAST, VGO and BBB. Afterwards, they can either be accepted for/rejected from annotation. GATU can handle multiple-exon genes as well as mature pepti...2538 days ago
- ...f RNA-seq, locating the candidate introns and adding up the score of all exons. This is very different from other versions of BLAST, where each exon is scored as a separate hit a...
2326 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed transcripts. Scallop a...2194 days ago
- ChopStitch is a new method for finding putative exons and constructing splice grap...n sequencing (WGSS) data. ChopStitch identifies exon-exon boundaries in de novo as...of our tool is a FASTA file containing putative exons. Further, exon edges are int...
2138 days ago
- ...f RNA-seq, locating the candidate introns and adding up the score of all exons. This is very different from other versions of BLAST, where each exon is scored as a separate hit a...
2096 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
...s, short indels, replacements and (using the assembly option) deletions up to several kb. It has been extensively tested on whole-genome, exon-capture, and targeted ca...2024 days ago
- ...f RNA-seq, locating the candidate introns and adding up the score of all exons. This is very different from other versions of BLAST, where each exon is scored as a separate hit a...
1512 days ago
HS3D: Homo Sapiens Splice Sites Dataset
...ce Sites Dataset) is a data set of Homo Sapiens Exon, Intron and Splice regions ex...ar DNA including Complete CDS and more than one Exon have been selected, and 4523...ted from these entries. Details about extracted exons and introns are reported (Lo...1428 days ago
