Dot, an interactive viewer for genome-genome comparison
...interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate new assemblies and perform exploratory comparative genomics. ...2311 days ago
modelStudio: a package automates the explanation of machine learning predictive models
...p;D3.js to produce plots and descriptions for various local and global explanations. Tools for model exploration unite with tools for EDA (Exploratory Data Analysis) to give a broa...1573 days ago
BioRuby :Ruby packages for biologist
...University(Bioinformatics Center) and the Open Bio Foundation. The project was supported by Information-technology Promotion Agency (IPA) as an Exploratory Software Project in 2005RubyF...3956 days ago
3955 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...gramming and graphics Data manipulation and functions Graphics for exploratory data analysis Introductory s...bel's awk tutorial Executing an awk command from R to simplify data exploratory analysis, from Lex Nederbragt...3788 days ago
3093 days ago
RNA-seq workflow: gene-level exploratory analysis and differential expression
Here we walk through an end-to-end gene-level RNA-seq differential expression workflow using Bioconductor packages. We will start from the FASTQ files, show how these were quantified to the reference transcripts, and prepare gene-level count datasets for downstream analysis. We will perform explo...Tags: RNA-seq, workflow, gene-level, exploratory, analysis, differential, expression
947 days ago