RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
...arch tool and to keep pace with advancements in bioinformatics, it has become desirable to build a version of RAST that is both customizable and extensible. In this paper, we describe t...2938 days ago
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slacTree: SVG Large Annotated Circular Tree drawing
A simple, extensible, Perl script for producing figures of large phylogenetic trees. While there are many other tree drawing programs, slacTree was originally written in 20...2506 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...peciation events. Using these standardized elements allows interoperability between various applications and databases. Furthermore, both due to extensible nature of XML itself and the...2357 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
...Serve huge datasets from a single low-cost cloud instance. Can run as a stand-alone app on OSX and Windows using the Electron platform Highly extensible plugin architecture, with a l...2145 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...peciation events. Using these standardized elements allows interoperability between various applications and databases. Furthermore, both due to extensible nature of XML itself and the...1618 days ago
sunbeam: A robust, extensible metagenomics pipeline
Sunbeam is a pipeline written in snakemake that simplifies and automates many of the steps in metagenomic sequencing analysis. It uses conda to manage...1425 days ago