Useful Links for Bioinformaticians
...o analysing sequence databases Sequence Comparison (Keith Robison) Database Research at Penn Biology, E. W. Myers Bill Pearson talks about Fasta Bioinformatics: Elementary S...3129 days ago
Perl one-liner for bioinformatician !!!
...otations/ http://genomics-array.blogspot.com/2010/11/some-unixperl-oneliners-for.html http://bioexpressblog.wordpress.com/2013/04/05/split-multi-fasta-sequence-file/3627 days ago
Commercial and public next-gen-seq (NGS) software
...en NW dynamic algorithm to a SW(like) local alignment. Authors are from CRIBI in Italy. Win/Linux. RMAP - Assembles 20 - 64 bp Illumina reads to a FASTA reference genome. By Andrew D...3517 days ago
Apps for Busy Bioinformatics Researchers !!!
...ludes handy tools such as "Reverse Complement", "Jump to", fast and end scrolling, "Chromatogram adjustments", amino acid translations, "export to fasta", and "searching for segment"...3540 days ago
Software packages for next gen sequence analysis
...NW dynamic algorithm to a SW(like) local alignment. Authors are from CRIBI in Italy. Win/Linux. * RMAP - Assembles 20 - 64 bp Illumina reads to a FASTA reference genome. By Andrew D...3241 days ago
2712 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...I to parse Reference genome: FASTA Output: VCF SOAPindel...ds) Input: raw NGS datasets; fasta, fastq, gzipped or not; no r...Input: BAM Reference Genome: FASTA indexed with SAMtools faidx...ith homology modeling Input: FASTA protein sequence, or accessio...2907 days ago
2868 days ago
Genome Assembly Tools and Software - PART1 !!
...ommand-line Perl script and additional files van be downloaded below. The input data is given by pre-assembled scaffold sequences (FASTA) and NGS paired-read data (FASTA or FASTQ). SSAKE 3.8.4 &...2684 days ago
Run miniasm assembler on nanopore reads !
...nd the detail of the reads repeats: fq2fa ONT_A.fastq ONT_A.fasta minimap2 -xava-ont ONT_A.fasta ONT_A.fasta -t10 -X > AONT...0final.eps Assemble with miniasm: miniasm -f ONT_A.fasta AONT.paf > AONT.gfa ...2329 days ago