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...e they are assembled separately using SPAdes. The main output is a FASTA file of the (in frame) CDS portion of the sample for each target region, and a separate file with the translated protein s...2754 days ago
Maq: Mapping and Assembly with Quality
...ourceforge.net/projects/maq/. Maq is previously known as mapass2. Run Maq Now Follow these steps to try Maq. All you need is a reference sequence file in the FASTA format. Prepa...2736 days ago
- ...suite for fast processing of FASTQ files. Various file manipulations are supported....vidual subcommands will take either a single file or a pair of files as input....ds that generate FASTQ data, either a single file or a pair of files will be ge...
2719 days ago
- ...be contacted via e-mail at: prism at cs.toronto.edu. Additional information is available in the PRISM README file and PRISM_CTX README file. http://compbio.cs.tor...
2717 days ago
- ...contigs (instead of providing .sam files). The arguments accepted by...is the directory where ScaffMatch files are stored. These are .sam f...e this option if you provide reads files; -1) (Comma separate...tching heuristics; -l) Log file - where to store the logs. Op...
2714 days ago
E-MEM: Efficient computation of Maximal Exact Matches
E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large genomes. See the README file for instructions on how to use E-MEM. E-MEM source code The source...2712 days ago
- ...am for downloading and/or updating files from ftp/http servers. The p...d to deal with bioinformatics data files and servers: optimized to...vast amount of data and very large file sets (~ 10,000 - 100,000). a...atch post-processing of downloaded files (archive extraction, file co...
2640 days ago
- ...icial documentation of the Perl 6 programming language is now published! Besides online browsing and searching, you can also view everything in one file or contribute by reporting mi...
2663 days ago
- ...deoplot.R --annotate annotations.bed Options --ideobed, i A bed file of reference contig lengths/c...ns. --out, -o PDF output name. --stripes, -s Specify a file containing the layout of the...
2652 days ago
- ...uences as concentric rings. BRIG will perform all BLAST comparisons and file parsing automatically via a s...unassembled sequence data. BRIG also accepts SAM-formatted read-mapping files enabling genomic regions pre...
2649 days ago
