Results for "file"
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...bedtools allows one tointersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF...2642 days ago
splitbam: splits a BAM by chromosomes
...ionary (*.dict), it also creates some empty BAM files if no sam record was found f...-h help; This screen. -R (indexed reference file) REQUIRED. -u (unmapped chro...air of sam records to the empty bam -p (output file/bam pattern) REQUIRED. MUST c...2637 days ago
- ...CLgenomics, individual genome data (genome sequences + annotation details) are compiled and saved in a specially formatted file called CLG (ChunLab Genomics). Each CLG file corresponds with one bacteria...
2634 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 pop...the pipeline or fine-tune the parameters by modifying its configuration file. SeqMule also has some built-...2630 days ago
- ...alled relative to a single reference sequence (one sequence in one FASTA file). Just run the main script, snpgenie.pl, in a directory containing the necessary input files, and we take care of the res...
2607 days ago
- ...ummary statistics derived from subset or element attributes. To begin, input your data using one of the three input styles. "File" takes a correctly formatted.csv file. "List" takes up to 6 differ...
2593 days ago
- ...tein search on short reads and longer sequences including contigs and assemblies, providing a speedup of BLAST ranging up to x20,000. More at file:///home/urbe/Downloads/diamon...
2580 days ago
- FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores. Both...
2574 days ago
- ...ptical maps for assembly can be found here: SOMA v2.0 (63 MB tar.gz file). This version of SOMA contai...for AMOS-Hybrid are available here: AMOS-Hybrid v1.0 (142 MB tar.gz file). Assembly and sequenc...
2556 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...s a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can produce genomi...2553 days ago
