Results for "file"

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  • Some useful Bioinformatics links

    ...ng only nanopore sequencing data | Nature Methods https://www.nature.com/articles/nmeth.3444 vezzi/FRC_align: Computes FRC from SAM/BAM file and not from afg files https://mail.google.com/mai...

    2256 days ago

  • Installing Bio::SCF perl module

    ...se.o gzclose.cgcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -...4.o -L. libz.agcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I....-I../plain -I../scf -I../exp_file -I../utils -I/usr/local/inclu...ILE.c' || echo './'`../utils/mFILE.c; \then mv -f ".deps/mFILE.T...

    2232 days ago

  • Bioinformatics OneLiner

    ...ne ends (\n) from a Unix text file: sed ':a;N;$!ba;s/\n//g' filename.txt > newfilename_onel...To copy (move, rename, etc) files based on their list in a tex...| wc -c To split multifasta file into many fasta files: awk '...te fasta headers from a fasta file. awk '/^>/{f=!d[$1];d[$1]...

    2231 days ago

  • Installing python-numpy !

    ...reviously unselected package python-pymysql.(Reading database ... 435155 files and directories currently in...s for gnome-menus (3.13.3-6ubuntu3.1) ...Processing triggers for desktop-file-utils (0.22-1ubuntu5.1) ...Pr...

    2204 days ago

  • Creating conda environment for python2.7

    ...me a new environment is created, add the default programs to the create_default_packages section of your .condarc configuration file. The default packages are ins...

    2204 days ago

  • Ancestral sequence reconstruction steps !

    ...1- Phi-test, implemented in SplitTree4"http://www.splitstree.org", (.nex file)   4.2- GARD deployed...p/Download"   4.5- Path-o-Gen (temporal structure of a tree input file -> arquivo.tre) These ste...

    2193 days ago

  • LINKS scaffolder bloomfilter setting !

    ...error: ../BloomFilter.hpp: No such file or directory compilation ter...ti/CORE/ -fPIC -Dbool=char -O3 In file included from BloomFilter_wra...Multi-FASTA format, required) -s file-of-filenames, full path to lo...al) -b base name for your output files (optional) -r Bloom filter...

    2165 days ago

  • Parallel Processing with Perl !

    ...size. The traditional way to analysis a file is using the while loop while (FILE){ Do something; } This is...cesses and want to write the data to one file. You need to lock the file to..._your_dataset/$max_processors);my $split_Files=`split -l $number_split &ldq...

    2094 days ago

  • Installing BLAT on Linux !

    ...c/blat directory and I copied the blatSrc35.zip file into that.Next I used unzip...#cd blatSrc before you begin read the README file that comes with the source co...ry called common.mk and I edited this file with the command:vi inc/commo...

    2077 days ago

  • Installing ELGG on Ubuntu !

    ...on to create the settings.php file in your installation director...lgg installation 2. Copy the file elgg-config/settings.example....rectory you'll end up with a file named/home/your-user-id/publi...from processing the .htaccess file which contains the rewrite ru...

    906 days ago