BOL: Results for "file"

Results for "file"

- Jit@jit.aber
use File::Basename; use lib dirname (__FILE__); # To search lib in local folder #Perl #Modules
2587 days ago
- Jit@jit.aber
To add something to end of all header lines: $ sed 's/>.*/&WHATEVERYOUWANT/' file.fa > outfile.fa #Add #Fasta
2586 days ago
- Jit@jit.aber
To clean up a fasta file so only first column of the header is outputted:$ awk '{print $1}' file.fa > output.fa #Sed #Clean #Header #Fasta
2586 days ago
- Jit@jit.aber
Convert MAF file format http://last.cbrc.jp/doc/maf-convert.html #MAF #Convert #Format
2567 days ago
- Jit@jit.aber
Rename/number the multi-fasta file in ascending order. $ awk '/^>/{print ">" ++i; next}{print}' < Mix_assembly.fasta > Mix_assembly2.fasta #awk #oneliner
2554 days ago
- Jit@jit.aber
Filter #blank #lines from a #fasta file using sed. $ sed '/^$/d' finalSample.fa > finalSample_filtered.fa #Linux #Filter #FASTA #SED
2547 days ago
- Jit@jit.aber
Handling #CSV file with #Perl http://perlmeme.org/tutorials/parsing_csv.html
2540 days ago
- Neelam Jha@neelam
Git large file storage https://git-lfs.github.com/ #Git #Large #File #Storage
2530 days ago
- Rahul Nayak@rahul
Count the number of bases in fasta file. grep -v ">" file.fasta | wc | awk '{print $3-$1}' #Fasta #Count #Bases
2523 days ago
- Jit@jit.aber
Remove four beginning characters from each line of the file. $ sed 's/^....//' genbank.txt #Remove #Sed #Text
2520 days ago