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PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format with quality information....2662 days ago
- ...am for downloading and/or updating files from ftp/http servers. The pr...d to deal with bioinformatics data files and servers: optimized to...ive retrieval of only the required files (file masks, ls-lR parsing, r...es. It can post-process downloaded files, including archive extraction...
2628 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
...xtensive DNA polymorphism analyses on large datasets. Among other features, the newly implemented methods allow for: (i) analyses on multiple data files; (ii) haplotype phasing; (iii...2648 days ago
- ...ackage to summarize, analyze and visualize MAF files. Introduction. With advances...summarize, analyze, annotate and visualize MAF files in an efficient manner either...alysis, visualization and summarization of MAF files from large-scale cohort based...
2637 days ago
- ...quence variation in a set of complete genomes, draft genomes or even raw, unassembled sequence data. BRIG also accepts SAM-formatted read-mapping files enabling genomic regions pres...
2637 days ago
- ... complement, and shuffle genomic intervals from multiple files in widely-used genomic file f...to do a relatively simple task (e.g., intersect two interval files), quite sophisticated analyse...
2630 days ago
splitbam: splits a BAM by chromosomes
splitbam splits a BAM by chromosomes. Using the reference sequence dictionary (*.dict), it also creates some empty BAM files if no sam record was found for a chromosome. A pair...2625 days ago
- ...p;Each CLG file corresponds with one bacterial genome. If multiple genomes are being considered and compared, multiple CLG files are needed. ChunLab offers >40,000 CLG files of publicly available Bacteri...
2622 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
...nome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files that are ready for editing in...2620 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can...2618 days ago
