List of visualization tools for network biology
...RID, DIP, HPRD, IntAct and MINT http://bioinfow.dep.usal.es/apid/ Arcadia Translates text-based descriptions of biological networks (SBML files) into standardized diagrams (...2287 days ago
List of visualization tools for genome alignments
...are summarized with a ‘percent identity plot’ (pip) http://pipmaker.bx.psu.edu/pipmaker/ PileLineGUI Handling genome position files in NGS studies http://sing.e...2283 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...l items in current directory, including hidden files ls -F — list all i...nbsp;— you can read and write - good for files chmod 700 file — y...running on port 1337 Searching grep pattern files — search for patte...2280 days ago
Awk for Bioinformatician and computational biologist
...ostly used for pattern scanning and processing. It searches one or more files to see if they contain lines...{Actions}' file The working of Awk is as followsAwk reads the input files one line at a time.For each l...2279 days ago
Computational resources for TE discovery and TE detection
...software/smartfinder Tandem Repeats Finder http://tandem.bu.edu/trf/trf.html Transposon Cluster Finder http://www.mssm.edu/labs/warbup01/paper/files.html TE nest http://www.pla...2273 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-c...849 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anything, which will be made easy with the right tools/libraries. Professionally,...2254 days ago
Some useful Bioinformatics links
...pore sequencing data | Nature Methods https://www.nature.com/articles/nmeth.3444 vezzi/FRC_align: Computes FRC from SAM/BAM file and not from afg files https://mail.google.com/mail...2241 days ago
Installing Bio::SCF perl module
...oaded from https://sourceforge.net/project/showfiles.php?group_id=100316&packa...f executables... checking for suffix of object files... ochecking whether we are u...file -I../utils -I/usr/local/include -fPIC -MT files.o -MD -MP -MF ".deps/files.Tp...2217 days ago
2216 days ago