Results for "files"
Bio-Scripts
library(vcfR) # Input the files. vcf2060 days ago
Generates a genome coverage plot with R
library(CoverageView) ##draw a coverage plot for a test case BAM file #get a BAM test file treatBAMfile2055 days ago
Generate simulated polyploid genome !
#Generate 3% divergence msbar -point 4 -count 16558 toy.fasta > toyheterozygous3percent.fasta #Cat both files cat toy.fasta toymutated3percent.fasta > toyheterozygous3percent....2053 days ago
- ...tslib-1.9/cram/cram_structs.h htslib-1.9/cram/files.c htslib-1.9/cram/mFILE.c h...cram_stats.c gcc -g -Wall -O2 -I. -c -o cram/files.o cram/files.c gcc -g -Wall...tats.c gcc -g -Wall -O2 -I. -fpic -c -o cram/files.pico cram/files.c gcc -g -Wa...
2019 days ago
Installing Platypus on Ubuntu !
...(Reading database ... 501922 files and directories currently ins...cram_stats.c gcc -g -Wall -O2 -I. -c -o cram/files.o cram/files.c gcc -g -Wall...tats.c gcc -g -Wall -O2 -I. -fpic -c -o cram/files.pico cram/files.c gcc -g -Wa...2019 days ago
- ...2s (458 kB/s) Selecting previously unselected package libjs-angularjs. (Reading database ... 185114 files and directories currently ins...
1551 days ago
Split the multifasta in separate files !
cat Avaga_allPalindrome.fa | awk '{ if (substr($0, 1, 1)==">") {filename=(substr($0,2) ".fa")} print $0 > filename }'1957 days ago
Samtools commands for bioinformatician !
...name samtools view -b -S -o sal_sej.bam sal_sej.sam ### viewing bam files (view command) samtool view...### indexing sorted file # ouput is file.bai # always index sorted files samtools index sal_sej_sorte...1603 days ago
- ...Extracting templates from packages: 100% Selecting previously unselected package gyp. (Reading database ... 180389 files and directories currently ins...
1553 days ago
Bash script to download SRA file !
...icular sequencing run ID fastq-dump --split-files SRR1770413 #SRA stores dat...into FASTQ for further processing. The --split-files part of the command ensures w...77/SRR1770413/SRR1770413.sra sra-dump --split-files SRR1770413.sra1559 days ago
