Results for "filter"
Top-level pages
Commercial and public next-gen-seq (NGS) software
...f, ace and bowtie map files, clean and filter contigs, look for snps and indels., filter snps, do statistics for: read...of the alignments. Spaced seed intial filter, then NW dynamic algorithm to...quence. Highly repetitive elements are filtered out by ignoring those kmer...3527 days ago
Software packages for next gen sequence analysis
...ulate very finely the sensitivity of the alignments. Spaced seed intial filter, then NW dynamic algorithm to...n reads to the finished genome sequence. Highly repetitive elements are filtered out by ignoring those kmer...3251 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...tives. The statistics reported for each event have to be used to custom-filter the list in order to lower fa...ed in ANNOVAR and VEP), HTML summary files SnpSIFT Description: Filter and manipulate annotated file...2917 days ago
Genome Assembly Tools and Software - PART1 !!
...ues in order to address variable transcript expression levels. It first filters and merges the multi-k assem.... This is done by mapping the contigs onto the reference using a q-gram filter. The mapping is visualized in...2694 days ago
Some useful Bioinformatics links
...samtools(1) manual page http://www.htslib.org/doc/samtools.html How To Filter Mapped Reads With Samtools h...s.jhu.edu/~langmea/resources/lecture_notes/assembly_olc.pdf SAM and BAM filtering oneliners https://gist.gi...2250 days ago
- ..." "\n" > myfile_1.fq) | cut -f 5-8 | \tr "\t" "\n" > myf2.fq To filter and sort contig identifiers f...tiple adjacent spaces by only one space: tr -s " " < file To filter fastq based on length (here l...
2226 days ago
LINKS scaffolder bloomfilter setting !
.../LINKS_1.8.6/bin ➜ bloomfilter git:(master) ✗ swig -Wall -c++ -perl5 BloomFilter.i ➜ bloomfilter git:(master...pilation terminated. ➜ bloomfilter git:(master) ✗ cd swig ➜ s...t files (optional) -r Bloom filter input file for sequences supp...2159 days ago
Frequent parameters for bioinformatics tools !
...ign.task_options.hit_policy: randombest Pbcoretools.task_options.other_filters: rq >= 0.7 Pbalign.task_...-skip-variants indels --output-type v --ploidy 1 -c SNPsift filter (SNP detection) "( QUAL >...1294 days ago
