Results for "find"
Top-level pages
...an annotated protein sequences: establish the correct order of sequence contigs to obtain one continuous sequence; find the tranlation and transcription initiation sites, find promoter sites, define open r...3949 days ago
- ...matician, and data has been dumped in your lap. Find the patterns, trend, answers,...ding. They scour databases for hidden patterns, finding predictive information tha...milar items together. Regression - Attempts to find a function which models the d...
3948 days ago
- ...best solution for the moment. The most popular greedy algorithm is finding the minimal spanning tree...lve a problem by transforming it into another problem. A simple example: finding the median in an unsorted...
3948 days ago
Best book Titles for Learning Bionformatics
...quencing and analysis, Adams M.D., Fields C., Venter J.C. (Editors), 1994, Academic Press Apart from above mentioned books, you can also find some useful books links at fo...3919 days ago
Most Commonly used Awk by Bioinformatician
...thing on the fly. You can use awk to make a neat one-liner for some quick job in the terminal, or build an awk section into a shell script. You can find a lot of online tutorials, bu...3914 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
...mismatch repair which is very inefficient. Hence, over evolutionary time scales, the methylated CG sequence will be converted to the TG sequence. Find step wise explanationand impl...3826 days ago
List of In-silico Binding Site Prediction Tools
...sites from four methods: LIGSITEcs, PASS, Q-SiteFinder, and SURFNET are combined t...of the computation of depth can be found here. FINDSITE: http://cssb.biology.gate...servation-based and structure-based methods. We find that the two approaches provi...3745 days ago
Perl one-liner for bioinformatician !!!
...umber fields(words) in each line.perl -alne '$t += @F; END { print $t}' #Find total number of words in the fileperl -alne 'map { /regex/ && $t++ } @F; END { print $t }' #find total number of fields that m...3630 days ago
Next generation sequencing in R or bioconductor environment
...m either ChIP-seq or ChIP-chip experiments. It includes functions to retrieve the sequences around peaks, obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon, miRNA...3626 days ago
Commercial and public next-gen-seq (NGS) software
...alignment search, guaranteeing to find epsilon-matches between two s...SAM — a very fast program to find semiglobal non-gapped alignme...g Algorithm) is a tool for rapidly finding near exact matches in DNA...Boston College.Maq is also able to find SNPs with its own alignment....3520 days ago
