Results for "format"
Top-level pages
...reference genome. Alignment information is stored in the SAM or BAM file formats. bcftools: a set of compani...s to a reference genome. BAM Format: binary, compressed format fo...higher accuracy. In the FASTQ format, Phred scores are represented...2880 days ago
Genome Assembly Tools and Software - PART1 !!
...sembler is revolutionary bioinformatics software for automatic DNA...HMMs. The inclusion of HMM information guides the assembly, with...assembly program . It uses information from paired-end reads to o...length-dependent model of gap formation. BUSCO v1.1b1 –...2697 days ago
Source Code and Pseudo Code !!
...tialize, when assigning values to variables is also desirable. More on Formatting and Conventions in Pseudo...to be on separate lines with spaces in between each explanatory item. FORMAT of flowerbox should be ...2670 days ago
Perl Special Vars Quick Reference
...icode. ${^OPEN} Internal use: \0 separated Input / Output layer information. ${^UNICODE} Read-on...Subscript separator. (Use a real multidimensional array instead.) Formats $% Page number for cur...2655 days ago
Awesome perl frameworks, libraries and software - PART 1
...dnsenum is a perl script that enumerates DNS information evalEmpire/perl5i -...mharsch/arcstat - uses Perl to extract, format, and display kstats from the...ts - Practical, reusable scripts for bioinformatics mozilla-bteam/bmo -...2501 days ago
- ...sample data is in Excel format, and needs to be imported int...p;Minitab Portable Worksheet format, it can be opened with the fu...the data files in SPSS format, it can be opened with the fu...comma separated values (CSV) format. Each cell inside such data f...
2500 days ago
- ...disables repeat resolution stage of assembling Advanced options: --dataset <filename> file with dataset description in YAML format -t/--threads <int>...
2362 days ago
Converting BLAST output into CSV
...ith most programs that run on UNIX, the text output is in some specific format. If the program is popular enough, there will be one or more parsers written for that format – these are just utilit...2348 days ago
Run miniasm assembler on nanopore reads !
...r noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream as...2341 days ago
- ...sequence header and sequence needed for fasta format. sed -n '1~4s/^@/>/p;2~4p...E You can linerize every 4 lines in a tabular format and print first and second fi...oawk Another option to convert fastq to fasta format using bioawk bioawk -c...
2317 days ago
