Genome Assembly Tools and Software - PART1 !!
...jectories of items with their sizes representing coverage of their c...nces of genomic DNA given the fragmentary data produced by whole-gen...merGenie 1.6982 – K-mer size Selection for Genome Assembly...studies. GRASP assembles the fragmented short-peptides, which a...2684 days ago
Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subroutine parameters. $a$b sort comparison routine variables. @ARGV The command-line args....2643 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end r...eads from both ends of longer fragments. The lengths of these fragments are assumed to be sampled fr...no-SV regions, therefore the fragment size distribu...minimum and maximum expected fragment size.discordant reads: briefl...2521 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically analyze a circuit (a “network” of interconnected components). The Network ana...2287 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the f...; list items in current directory and show in long format to see perimissions, size, and modification date ls -a&...2279 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze their data using a very intuitive workflow for the analysis and visualization of...2263 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some us...libz.so.1.2.11 with gcc.Checking for size_t... Yes.Checking for off64_t.... nochecking for short... yeschecking size of short... 2checking for int...from pointer to integer of different size [-Wpointer-to-int-cast] ret_v...2217 days ago
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Parallel Processing with Perl !
Here is a small tutorial on how to make best use of multiple processors for bioinformat...informatics we need to deal with huge datasets which are more than 100GB size. The traditional way to analy...2079 days ago