Results for "frequency"
Bio-Scripts
Count the frequency of base G in a given DNA sequence
#!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #initialize $countG and $currentPos my $countG = 0; my $currentPos = 0; #calculate the len...2932 days ago
Calculate Dinucleotide Frequency with Perl
#!/usr/bin/perl -w use strict; my ($genome, $head, $tail); my (%mono_nt, %di_nt); $/ = ">"; open my $fasta, '2353 days ago
Plot the clock using Lastz -gerenal outfile
use strict; use warnings; use Statistics::R ; use List::Util qw(sum); #Usage perl clockPlot.pl Palindrome.palfc 1500 my $R = Statistics::R->new() ; $R->startR ;...2314 days ago
- ...a reference sequence to a new FASTA file. FindBadGenomicKmersSpark (BETA Tool) Identifies sequences that occur at high frequency in a reference NonNFasta...
2090 days ago
Samtools commands for bioinformatician !
...s.bcf > sal_vars.vcf ### note: new command is "call". type "bcftools" to see current version and commands ### calling snp and indels with no frequency threshold # omit -v paramete...1618 days ago
