Gooey: Turn (almost) any Python command line program into a full GUI application with one line
Turn (almost) any Python command line program into a full GUI application with one line The easiest way to install Gooey is via pip pip install Gooey Alternatively, you ca...1645 days ago
simuG: a general-purpose genome simulator
...ic variants can be very useful for benchmarking genomic and bioinformatics analyses. Here we introduce simuG, a lightweight tool for simulating the full-spectrum of genomic variants...1618 days ago
1592 days ago
StringTie Transcript assembly and quantification for RNA-Seq
...nto potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length transcripts representi...1424 days ago
LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities an...1536 days ago
BlobToolKit: A toolkit for genome assembly QC
...a BlobDir dataset with BlobTools2, ready for visualisation in the Viewer. Paper https://www.biorxiv.org/content/10.1101/844852v1.full.pdf...1533 days ago
1497 days ago
merqury: Evaluate genome assemblies with k-mers
...high quality reference. Merqury provides a set of tools for this purpose. More at https://www.biorxiv.org/content/10.1101/2020.03.15.992941v1.full1399 days ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the c...1355 days ago
COVID Moonshot: An international effort to DISCOVER A COVID ANTIVIRAL
...tners to make and test in the lab. With each drug design tested, we get closer to our goal. More at https://iubmb.onlinelibrary.wiley.com/doi/full/10.1002/bmb.214801230 days ago