Results for "functional genomics"
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SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alig...uma. Bioinformatics, 26(9), 1145-51. Tutorial at http://evomics.org/learning/genomics/satsuma/2915 days ago
PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2905 days ago
- This histone database can be used to explore the diversity of histone proteins and their sequence variants in many org...source was established to better understand how sequence variation may affect function...
2894 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configurat...2167 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visualize function...
2880 days ago
- ...ables: 1) building and visualizing chromatin interaction networks, 2) annotating networks with user-provided private and publicly available functional genomics and interaction datasets, 3)...
2870 days ago
- Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox for interactively analyzing microbio...omic analysis using the NCBI taxonomy or a customized taxonomy such as SILVA Function...
2842 days ago
Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSBs). Using porcine HSBs and str...2734 days ago
Method in Comparative genomics !!
...he pressure to conserve the reading frame of functional proteins and developed a test...ajority of discovered motifs are enriched in functionally related genes, allowing us...results demonstrate the power of comparative genomics to further our understanding...2734 days ago
- This is a comprehensive update to Shaun Purcell's PLINK command-line program, developed by Christopher Chang with support from the NIH-NIDDK's L...
2748 days ago
