Results for "gaps"
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Resolving the complexity of the human genome using single-molecule sequencing
...most complete mammalian reference assembly yet more than 160 euchromatic gaps remain and aspects of its str.../www.genomeweb.com/sequencing/team-uses-single-molecule-sequencing-close-gaps-chart-complexity-human-refere...3229 days ago
- ...ces Small indels Larger indel or block substitution events Gap filling Identification of local misassemblies, including optional opening of new gaps More at https://github.com...
3017 days ago
- ...y; Papaya, an all-purpose alignment tool for less diverged sequences; and SLAP, a context-sensitive local aligner for diverged sequences with large gaps. Access Spines here....
3017 days ago
- ...be less fragmented and with total size smaller than the input contigs. In addition, Redundans will automatically close the gaps resulting from genome as...
2812 days ago
- ...;an all-purpose alignment tool for less diverged sequences; and SLAP, a context-sensitive local aligner for diverged sequences with large gaps. Access Spines her...
2724 days ago
- ...arge rearrangements ie. deletions, insertion, inversions, translocations. Note however, this is experimental implementation! Consider closing gaps after scaffolding....
2702 days ago
- ...iguate (align, order, orientate) , visualize and design primers to close gaps on shotgun assembled contigs...hen processed to generate a pseudomolecule taking overlaping contigs and gaps in to account. MUMmer's align...
2643 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...ing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgrad...2632 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...t a closely related reference. IMAGE, an iterative approach for closing gaps in assembled genomes using mate pair information. It is able to close gaps left open by the assembler in...2558 days ago
- ...graph structure that can serve to guide finishing and in some case close gaps in-silico. Also, in many cases, sequence composition of contigs can provide clues to fill gaps in scaffolds. A set of script...
2550 days ago
