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Results for "gaps"

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• • Jit@jit.aber

  

  GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads

  This software is provided ``as is” without warranty of any kind. In no event shall the author be held responsible for any damage resulting from the use of this software. The program package, including source codes, executables, and this documentation, is distributed free of charge. If you u...

  Tags: GAPPadder, Sensitive, Approach, Closing, Gaps, Draft, Genomes, Short, Sequence, Reads, Genome, Assembly

  2176 days ago

• • Shruti Paniwala@shruti

  

  GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments

  GMcloser uses likelihood-based classifiers calculated from the alignment statistics between scaffolds, contigs and paired-end reads to correctly assign contigs or long reads to gap regions of scaffolds, thereby achieving accurate and efficient gap closure. We demonstrate with sequencing data from...

  Tags: GMcloser, close, gaps, assemblies, accurately, likelihood-based, selection, contig, long-read, alignments, Genome, Assembly

  2148 days ago

• • Jit@jit.aber

  

  #Improving draft #assemblies by iterative mapping and #assembly of short reads to eliminate #gaps https://genomebiology.biomedcentral.com/articles/10.1186/gb-2010-11-4-r41

  Tags: Improving, assemblies, assembly, gaps

  1547 days ago