2572 days ago
2570 days ago
ERGO 2.0 Bioinformatics suites
...enomic database integrated with the largest collection of microbial metabolic and non-metabolic pathways, ERGO™ assigns functions to genes, integrates genes into pathways, and identifie...2558 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...tion is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and...2558 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
...well as on a laptop computer for microbial datasets. It also facilitates the real-time analysis of positional information such as gene ordering and the detection of genes from mobile elements (plasmi...2551 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
...eins is presented. The method is quantitative, reproducible, and computationally undemanding. It can be combined with genomic signature and/or phylogenetic tree-building procedures t...2521 days ago
2518 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
...servation profiles for evolutionarily distant and closely related species. Input formats, automated data upload from the UCSC Genome Browser, gene annotation, annotation of rep...2493 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
...ut a set of genomes represented as sequences of genes (or synteny blocks) and prod...stral genomes at the internal nodes of the phylogenetic tree. The phylogenetic tr...ome of interest. Since version 2 MGRA supports gene insertion and deletions in ad...2488 days ago
2376 days ago