Results for "gene"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez...assessment of Illumina second-generation sequencing data. Cox et...blisher Website Differential gene and transcript expression ana...framework for analyzing next-generation DNA sequencing data. Mc...3772 days ago
List of bioinformatics open source projects/software.
...l for designing and executing phylogenetic workflows AutoDock http:...n UniProt KB(Swiss-Prot + TrEMBL), Gene Ontology (GO), UniRef (50,90,...kflow and data integration system GenePattern http://www.broadinsti...WebServer Bioinformatics and phylogenetics webserver (NJ, PhyML, RAx...3749 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/...ss/CDPOP CDPOP is a landscape genetics tool for simulating the emergence of spatial genetic structure in populations r...ulates interactions among two genetic and one environmental fact...sequence evolution along phylogenetic trees. http://tree.bio.ed....3729 days ago
Perl one-liner for bioinformatician !!!
...in=5; $max=15; $, = " "; print map { int(rand($max-$min))+$min } 1..$n' #Generates 10 random numbers betwee...print map { ("a".."z",”0”..”9”)[rand 36] } 1..8'#Generates a 8 character password f...3620 days ago
Next generation sequencing in R or bioconductor environment
...from either ChIP-seq or ChIP-chip experiments. It includes functions to retrieve the sequences around peaks, obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon, miRNA or custom featur...3617 days ago
Commercial and public next-gen-seq (NGS) software
...eq, DNA-Seq, DNA Methylation, Gene Expression, Exon, miRNA Expre...omas Wu and Colin Watanabe at Genentec. C/Perl for Unix. gnumap...ool REPuter, but is much more general, with a very flexible user...alization Tool. It provides a generic platform for manipulating,...3511 days ago
- ...peutic related research and also known to play vital role in controlling gene expression specifically at tr...alysing miRNA Sequencing data : http://www.illumina.com/applications/epigenetics/small_rna_analysis.ilmn...
3488 days ago
Apps for Busy Bioinformatics Researchers !!!
...s/details?id=bii.seqdatreader&hl=en BioGene:iPhone/iPad BioGene is an information tool for bi...a PubMed viewer. Key Features: Look up genes by symbol or description. G...abase pages. Key features: Search using gene name or keywords Browse by f...3534 days ago
- ...ological mechanisms pursue by genes. Pathway Analysis is not onl...a particular set of expressed genes follow but also to disclose...lso relationships between the genes, their transcripts, and thei...20Analysis.pdf http://gettinggeneticsdone.blogspot.de/2012/03/p...
3488 days ago
Software packages for next gen sequence analysis
...ool and produce others. * NextGENe - de novo and reference assem...omas Wu and Colin Watanabe at Genentec. C/Perl for Unix. * gnuma...ool REPuter, but is much more general, with a very flexible user...alization Tool. It provides a generic platform for manipulating,...3235 days ago
