Results for "gene expression"
Top-level pages
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
...islands are often located around the promoters of housekeeping genes (which are essential for general cell functions) or other g...ces in inactive genes are usually methylated to suppress their expression. The methylated cytosine may...3825 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez...blisher Website Differential gene and transcript expression analysis of RNA-Seq experimen...framework for analyzing next-generation DNA sequencing data. McKenna...3780 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, change...designing and executing phylogenetic workflows AutoDock http:...Prot KB(Swiss-Prot + TrEMBL), Gene Ontology (GO), UniRef (50,90,...and data integration system GenePattern http://www.broadinsti...rver Bioinformatics and phylogenetics w...3757 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ss/CDPOP CDPOP is a landscape genetics tool for simulating the emergence of spatial genetic structure in populations r...gram package for evolutionary genetics and genomics. http://eggl...ulates interactions among two genetic and one environmental fact...sequence evolution along phylogenetic tr...3738 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformatici..."; print map { int(rand($max-$min))+$min } 1..$n' #Generates 10 random numbers betwee...,”0”..”9”)[rand 36] } 1..8'#Generates...3629 days ago
Next generation sequencing in R or bioconductor environment
...quences around peaks, obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon, miRNA or custom featur...ual. Documentation Differential Gene Expression Analysis with DESeq The DESe...ove. Documentation Differential Gene Expression Analysis with edgeR The edge...3625 days ago
Commercial and public next-gen-seq (NGS) software
...eq, DNA-Seq, DNA Methylation, Gene Expression, Exon, miRNA Expression, Copy Number, Allele-Sp...omas Wu and Colin Watanabe at Genentec. C/Perl for Unix. gnumap...ool REPuter, but is much more general, with a very flexible user inter...alization Tool. It provides a generic platform for manipulating, analy...3519 days ago
- ...tic related research and also known to play vital role in controlling gene expression specifically at transcr...sing miRNA Sequencing data : http://www.illumina.com/applications/epigenetics/small_rna_analysis.ilmn More:...
3496 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for...?id=bii.seqdatreader&hl=en BioGene:iPhone/iPad BioGene is an information tool for bi...viewer. Key Features: Look up genes by symbol or description. G...es. Key features: Search using gene name...3542 days ago
- ...a particular set of expressed genes follow but also to disclose...lso relationships between the genes, their transcripts, and thei...CI,WikiPathways,etc) and gene expression result for a specific c...20Analysis.pdf http://gettinggeneticsdone.blogspot.de/2012/03/pathway...
3496 days ago
