Commercial and public next-gen-seq (NGS) software
...ARCGS - De novo assembly of short reads. Authors are Dohm JC, Lottaz C, Borodina T and Himmelbauer H. from the Max-Planck-Institute for Molecular Genetics. SSAKE - The Short Sequence A...3513 days ago
Software packages for next gen sequence analysis
...ARCGS - De novo assembly of short reads. Authors are Dohm JC, Lottaz C, Borodina T and Himmelbauer H. from the Max-Planck-Institute for Molecular Genetics. * SSAKE - The Short Sequence...3237 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...el analysis, CNV prediction and disease discovery, whole genome alignment, etc. Data can be imported from Clinvar, dbSNP, Genbank:http://www.softgenetics.com/PDF/NextGene_UsersManual_...2903 days ago
Tools for Searching Repeats And Palindromic Sequences
...uman genome is repetitive in nature and as improvements are made in detection methods this number is expected to increase. On the other hand; In genetics, the term palindrome refers t...2205 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...ing the least number of changes in character states is the best. phylogenetics -- Field of biology that deal...ity of life. Systematics is usually divided into the two areas of phylogenetics and taxonomy. taxon -- Any n...2456 days ago
Computational resources for TE discovery and TE detection
...jaketu.biochem.vt.edu/dl_software.htm HMMER http://hmmer.janelia.org/ LTR_FINDER http://tlife.fudan.edu.cn/ltr_finder/ LTR_STRUC http://www.genetics.uga.edu/retrolab/data/LTR_Str...2268 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which are produced extensively by genetics and genomics studies, relies crucially on the accurate calling of SNPs and geno...2090 days ago