Results for "genetics test"
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Useful Publications and Websites for Deep Sequencing Data Analysis
...Next generation quantitative genetics in plants. Jiménez-G&o...cing data. Auer & Doerge, Genetics 185(2):405-16, 2010. PubMedCe...Two-stage Poisson model for testing RNA-seq data. Auer and Doerge,...me duplication. Amores et al, Genetics 188(4):799-808, 2011. PubMed...3782 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ss/CDPOP CDPOP is a landscape genetics tool for simulating the emerg...gram package for evolutionary genetics and genomics. http://egglib.s...et/EvolSimulator A simulation test bed for hypotheses of genome evol...ocess. http://badri-populationgeneticsimulators.blogspot.com/FPG For...3740 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Si...servers and manual prediction groups tested at both CASP8 and CASP9.RES...op manual prediction groups that were tested at CASP8. The FunFOLD metho...you to extract pocket descriptors and test own scoring functions respect...3747 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS...t-mixture model. The following sample code uses the test data set from the above Bayes...biomaRt, IRanges, Biostrings, BSgenome, GO.db, multtest and stat packages. Documentat...3627 days ago
Commercial and public next-gen-seq (NGS) software
...H. from the Max-Planck-Institute for Molecular Genetics. SSAKE - The Short Sequence A...t-gen sequencing data. A partially implemented test version is available here XMa...Genome Sciences Centre. JAVA/OS independent. Latest versions available as part of...3521 days ago
Software packages for next gen sequence analysis
...H. from the Max-Planck-Institute for Molecular Genetics. * SSAKE - The Short Sequence...t-gen sequencing data. A partially implemented test version is available here * X...Genome Sciences Centre. JAVA/OS independent. Latest versions available as part of...3245 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...dbSNP, Genbank:http://www.softgenetics.com/PDF/NextGene_UsersManual_...handle Illumina data; cannot test candidate indels; written in...ts somatic SNVs with multiple testing correction, uses Fisher&rs...plications including: carrier testing, or identification of caus...2911 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches o...detection methods this number is expected to increase. On the other hand; In gene...2214 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of...showed that SWAP-Assembler is the fastest and most efficient assemblers...mblers. Specially, in the scalability test, SWAP-Assembler can scales up...erative manner. From a good number of tests we see the program yields ex...2688 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be execute...mpute, calculate, add, sum, multiply, ... print, display, input, output, edit, test , etc. with careful indentati...2662 days ago
