REAPR: a universal tool for genome assembly evaluation
...t evaluates the accuracy of a genome assembly using mapped paired end rea...ithout the use of a reference genome for comparison. It can be used in any stage of an assembly pipeline to automatically bre...der to score each base of the assembly. http://www.sanger.ac.uk/sci...2962 days ago
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HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is i...equence manipulation Mapping reads to a reference genome Manipulating SAM/BAM alignment files Visualizing data in a genome b...2943 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplications. mrFAST maps short...2943 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molec...level, feel free to use and report issues encountered. Canu is a hierachical assembly pipeline which runs in four s...2926 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analy...organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes)...2940 days ago
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