Results for "genome assembly"
Top-level pages
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assemb...typically by minimap) as input and outputs an assembly graph in the GFA fo...> AONT_miniasm_self10000.eps Njoy the assembly !...2329 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (...2313 days ago
List of visualization tools for genome alignments
Genome browsers are useful not...d publication ready figure of genomes. Following are the list of genome alignment visualization tools...on information of a reference genome http://bioinformatics.zj.cn/...d visualizing sequenced human genomes http://www.svaproject.org Vi...2282 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alignment has...TR_Struc.html LTR_MINER http://genomebiology.com/2004/5/10/R79/supp...eforge.net/ REPuter http://www.genomes.de/ RetroMap http://www.burc...2273 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze...view of the workflow which includes Transcriptome/ Genome alignment, Differential expre...ering, Venn diagrams, CVA, UMI support and elastic genome b...2263 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material betw...NA must enter the host nucleus, integrate into the genome, and in more complex organism...otential for genetic incompatibility with the host genome a...849 days ago
Some useful Bioinformatics links
...my/term/131 De novo long-read assembly of a complex animal genome | bioRxiv https://www.biorxi...-scale scaffolding of de novo genome assemblies based on chromatin i...ed on the FMD-index for large genomes https://github.com/lh3/fermi...oter_tutorial//Tutorial/CustomGenomes/CustomGenomes.html https://be...2240 days ago
- To remove all line ends (\n) from a Unix text file: sed...py of duplicated lines: awk '!seen[$0]++' To sum assembly size from SPAdes contigs.fast...To filter and sort contig identifiers from SPAdes assembly (e.g. here lenght >= 4000...
2216 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challenge in current sequencing stud...ingle‐nucleotide variants as well as insertion/deletions variants in the human genome&r...2202 days ago
- $ sudo apt-get install python-numpy python-scipy python-matplotlib ipython ipython-note...##[Mon May 7 11:29:18 2018] Reduction...#file name genome size contigs heterozygous siz...May 7 11:29:35 2018] Final reduction...#file name genome s...
2189 days ago
