Results for "genome letters"
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HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assem...1091 days ago
Simons Genome Diversity Project
Complete genome sequences from more than one hundred diverse human populations All genomes in the dataset were sequenced to at least 30x coverage using Il...researchers eliminated bias of alleles toward matching the human genome...1091 days ago
Alignment of closely related whole genomes/scaffolds
With the relative ease and low cost of current generation sequencing techn...c increase in the number of sequenced genomes for species across the tree...at can quickly compare multiple whole-genome sequences, millions of base p...created to report new tools for whole genome...3017 days ago
- MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome...
3008 days ago
- Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/
3008 days ago
- RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first developed to transfer annotations between different genome assembly versions. How...
3008 days ago
- Pilon is a software tool which can be used to: Automatically improve draft assemblie...ion Pilon requires as input a FASTA file of the genome along with one or more BAM fi...ysis to identify inconsistencies between the input genome...
3007 days ago
- Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools
3007 days ago
- Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/
3007 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between diffe...GFF/GTF, VCF. CrossMap is designed to liftover genome coordinates between assemblie...t a program for aligning sequences to reference genome....
3007 days ago
