Results for "genome notes"
Top-level pages
Best book Titles for Learning Bionformatics
...ey & Sons Mathematics of Genome Analysis, Jerome K. Percus, 2...lishers Bioinformatics: From Genomes to Drugs, Thomas Lengauer (E...iv Press Neural Networks and Genome Informatics, Cathy H. Wu, Jer...yer, 2002, Benjamin/Cummings Genomes, Terence A. Brown, 2002, Joh...3915 days ago
- Genome Browser is the platform/database used for searching and retreiving sequences and annotation of genomes belong to various eukaryotes...: http://www.ensembl.org/index.html http://ensemblgenom...
3912 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...encing libraries. Aird et al, Genome Biology 12:R18, 2011 Full Tex...ent de novo assembly of large genomes using compressed data struct...software package] Comparing genomes and assemblies; variant dete...g data tables A set of awk notes from Boston University Bruce...3777 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared (in modified or unmodified form...information about biological sequences collected from the environment. GenomeSpace http://www.genom...3755 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief desc...LF A Simulation Framework for Genome Evolution http://www.cbrg.eth...on test bed for hypotheses of genome evolution http://acb.qfab.org...ts/gametes/?source=navbarGASP Genometric Analysis Simulation Progr...al composition of typical metagenom...3735 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis,...s, rtracklayer, GenomicFeatures and BSgenome. Compared to the IRange...for SNP analysis: snpMatrix BSgenome BSgenome provides an object...s the biomaRt, IRanges, Biostrings, BSgenom...3622 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and refer...uences produced on a Illumina Genome Analyzer. A suite created by..., such as the human reference genome. By default, BWA finds an ali...na reads to a FASTA reference genome. By Andrew D. Smith and Zheny...zner from UCSD. (published in Genom...3517 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genom...3547 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the o...COSMIC, KEGG, PubMed, SymAtlas, UCSC genome browser, Pathway Commons, Gen...om/us/app/geneindex/id319769866?mt=8 Genome Voyager: iPad Gain first han...t. SimGene alsocontains an integrated genom...3539 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad ( Institute of Bio...swar National Institute Of Immunology, New Delhi National Centre For Plant Genom...2569 days ago
